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HlaCompletion -ethnicity ETHNICITY {-outputLineLimit 100000} {-sparse} {-combinationLimit 10000} inputFile phaseFile unphaseFile
  • where ETHNICITY is African, Amerindian, Asian, European, Hispanic
  • 'outputLineLimit' limits the total lines of output. If it is reached, a warning message is written as the last line of the output.
  • 'combinationLimit' limits the number of combinations of HLAs consider in one phase for one case. It is is reached, an error message is output for that case in place of results.
  • '-sparse' reads files in sparse format


Input File Formats

Last edited Oct 8, 2008 at 12:04 AM by CarlK, version 28


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