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A web server exposing this components of this tool is available at


Z. Brumme, C. Brumme, D. Heckerman, B. Korber, M. Daniels, J. Carlson, C. Kadie, T. Bhattacharya, C. Chui, T. Mo, R. Hogg, J. Montaner, N. Frahm, C. Brander, B. Walker, P. Harrigan. Evidence of Differential HLA Class I-Mediated Viral Evolution in Functional and Accessory/Regulatory Genes of HIV-1. PLoS Pathogens, 3(7): e94, July 2007.

J. Carlson, C. Kadie, S. Mallal, and D. Heckerman. Leveraging hierarchical population structure in discrete association studies. PLoS ONE, 2(7): e591, July 2007.

Tanmoy Bhattacharya, Marcus Daniels, David Heckerman, Brian Foley, Nicole Frahm, Carl Kadie,Jonathan Carlson, Karina Yusim, Ben McMahon, Brian Gaschen, Simon Mallal, James I. Mullins, David C. Nickle, Joshua Herbeck, Christine Rousseau, Gerald H. Learn, Toshiyuki Miura, Christian Brander, Bruce Walker, Bette Korber. Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations. Science 16 March 2007: Vol. 315. no. 5818, pp. 1583 - 1586

Web Version, including some general information

Pre-Compiled Programs for Windows

Source Code Files

(To download see Source Code tab above)
  • Solution file: PhyloTree\PhyloTree.sln
  • Build directory: PhyloTree\PhyloD\bin\Release
  • Build directory: PhyloTree\Tabulate\bin\Release
  • Solution file: PhyloTree\PhyloDCCS.sln
  • Build directory: PhyloTree\PhyloDCcs\bin\Release
  • Solution file: PhyloTree\PhyloDDNsln
  • Build directory: PhyloTree\PhyloDDN\bin\Release


How to run regression tests

Last edited May 24, 2016 at 5:26 PM by jcarlson, version 47


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